CSIRO PUBLISHING www.publish.csiro.au/journals/is Invertebrate Systematics, 2006, 20, 305–365

Source URL: hydrodictyon.eeb.uconn.edu

• Burying beetle
• Science
• Genetics
• Maximum parsimony
• Autapomorphy
• Nicrophorini
• Basal
• Phylogenetics
• Silphidae
• Biology

* Readings: Chapter 6 in Page and Holmes[removed]Molecular Evolution: A Phylogenetic Approach - especially pages[removed]for midterm - scan the sections on quartets Optional: Chapter 11 in Felsenstein (2004)

Source URL: hydrodictyon.eeb.uconn.edu

• Bioinformatics
• Biology
• Maximum parsimony
• UPGMA
• Substitution model
• Distance matrices in phylogeny
• Molecular evolution
• PHYLIP
• Computational phylogenetics
• Phylogenetics
• Science

Psychological Bulletin 1989, Vol. 106, No. 2, [removed]Copyright 1989 by the American Psychological Association, Inc[removed]/$00.75

Source URL: www.psych.uni-goettingen.de

• Data mining
• Detection theory
• Receiver operating characteristic
• Socioeconomics
• Statistical classification
• Logarithm
• Noise
• Maximum parsimony
• Signal-to-noise ratio
• Statistics
• Mathematics
• Biostatistics

AST: An Automated Sequence-Sampling Method for Improving the Taxonomic Diversity of Gene Phylogenetic Trees Chan Zhou1¤a, Fenglou Mao1, Yanbin Yin1¤b, Jinling Huang2, Johann Peter Gogarten3, Ying Xu1,4* 1 Computational

Source URL: bioenergycenter.org

• Science
• Bioinformatics
• Genetics
• Evolutionary biology
• Phylogenetic tree
• Maximum parsimony
• Homology
• Sequence alignment
• BLAST
• Biology
• Phylogenetics
• Computational phylogenetics

OP-MOLB130202[removed] ++

Source URL: kumarlab.net

• Computational phylogenetics
• Genetics
• Molecular evolution
• Molecular genetics
• Bioinformatics
• Molecular clock
• Sequence alignment
• Phylogenetic tree
• Maximum parsimony
• Phylogenetics
• Biology
• Science

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods Koichiro Tamura,1,2 Daniel Peterson,2 Nicholas Peterson,2 Glen Stecher,2 Masatoshi Nei,3 and

Source URL: kumarlab.net

• Phylogenetics
• Bioinformatics
• Genetics
• Masatoshi Nei
• Sequence alignment
• Substitution model
• Maximum parsimony
• Multiple sequence alignment
• Molecular clock
• Computational phylogenetics
• Biology
• Science

W38–W42 Nucleic Acids Research, 2007, Vol. 35, Web Server issue doi:[removed]nar/gkm224 Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics Joaquı´n Ta´rraga1,2, Ignacio Medina1, L

Source URL: www.ncbi.nlm.nih.gov

• Bioinformatics
• Phylogenetics
• Molecular evolution
• Genetics
• Ka/Ks ratio
• PHYLIP
• Phylogenetic tree
• Sequence alignment
• Maximum parsimony
• Computational phylogenetics
• Biology
• Science

Additional data file 4. Maximum parsimony (Figure S1) and Bayesian trees (Figures S2a, S2b, and S2c) of wild boars and domestic pigs from Asia and Europe based on complete and near-complete mtDNA sequences.

Source URL: genomebiology.com

The Phylogeny of a Dataset Andrea K. Thomer* Nicholas M. Weber* Center for Informatics Research in Science and Scholarship, Graduate School of Library and Information Science, University of Illinois at Urbana-Champaign 5

Source URL: www.asis.org

• Philosophy of biology
• Maximum parsimony
• Cladistics
• Phylogenetic tree
• Clade
• Systematics
• Data set
• Species
• Microbial phylogenetics
• Phylogenetics
• Science
• Biology

Revision shock in taxonomy

Source URL: www.hedgeslab.org

• Scientific classification
• Biology
• Taxonomy
• Computational phylogenetics
• Taxon
• Clade
• Maximum parsimony
• Species
• Neighbor joining
• Science
• Phylogenetics
• Zoological nomenclature